Publications

In recent years, the Diaz Lab has published research in a variety of academic journals, including Cancer Discovery, Genome Biology, and Cell. Below includes a selection of recent publications.

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo

Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA

Cell Stem Cell. 2013 May 2; 12 (5): 616-28. doi: 10.1016/j.stem.2013.03.003. Epub 2013 Apr 11.

PubMed Link >

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

Nellore A, Bobkov K, Howe E, Pankov A, Diaz A, Song JS

Front Genet. 2013 Jan 11; 3: 320. doi: 10.3389/fgene.2012.00320. eCollection 2012.

PubMed Link >

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

Diaz A, Nellore A, Song JS

Genome Biol. 2012 Oct 15; 13 (10): R98. doi: 10.1186/gb-2012-13-10-r98.

PubMed Link >

Normalization, bias correction, and peak calling for ChIP-seq

Diaz A, Park K, Lim DA, Song JS

Stat Appl Genet Mol Biol. 2012 Mar 31; 11 (3): Article 9. doi: 10.1515/1544-6115.1750.

PubMed Link >

Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal

Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF

PLoS Genet. 2012; 8 (3): e1002576. doi: 10.1371/journal.pgen.1002576. Epub 2012 Mar 15.

PubMed Link >