1. S. Müller, G. Kohanbash, S. Liu, B. Alvorado, D. Carrera, A. Bhaduri, P. Watchmaker, G. Yagnik, E. Di Lullo, M. Malatesta, N. Amankulor, A. Kriegstein, D. Lim, M. Aghi, H. Okada, A. Diaz. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biology. 2017.
  2. T. Bartlett, S. Müller and A. Diaz. Single-cell Co-expression Subnetwork Analysis. Scientific Reports. 7, 2017.
  3. S. Müller and A. DiazSingle-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic FingerprintFrontiers in Genetics. 8, 2017.
  4. S. Müller, D. He, J. Hayes, S. Liu, M. Malatesta, A. Kriegstein, M. Aghi, D. Lim, A. DiazGene-06. Expression Of Linc00152, A Putative Sponge For Tumor-suppressive micro-rna, Correlates With Glioma Grade. Neuro-Oncology. 19(6), 2017.
  5. S. Müller, G. Kohanbash, S. Liu, D. Carrera, P. Watchmaker, N. Jahan, B. Alvarado, D. Lim, M. Aghi, H. Okada, A. DiazTmic-11. Tumor Genetics And Macrophage Ontogeny Shape The Innate Immune Response To GliomaNeuro-Oncology. 19(6), 2017.
  6. S. Hilz, S. Shelton, L. Jalbert, H. Wong, T. Mazor, C. Hong, J. Hayes, T. Luks, H. Bengtsson, A. Molinaro, M. McDermott, M. Berger, D. Lim, A. Diaz, J. Phillips, S. Chang, S. Nelson, M. Oldham, J. Costello. Gene-33. The 3d Evolution And In Vivo Growth Patterns Of Glioma Cell PopulationsNeuro-Oncology. 19(6), 2017.
  7. G. Yagnik, A. Nguyen, S. Müller, B. Alvarado, P. Watchmaker, A. Kriegstein, A. Diaz, M. Aghi. Tmic-10. Tumor-associated Neutrophils Promote Glioblastoma Growth Via Osteopontin In A Targetable Manner. Neuro-Oncology. 19(6), 2017.
  8. S. Müller, S. J. Liu, E. Di Lullo, M. Malatesta, A. Pollen, T. J. Nowakowski, G. Kohanbash, M. Aghi, A. Kriegstein, D. A. Lim, A. Diaz. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF and EGF driven gliomas. Molecular Systems Biology. 12(11), 2016.
  9. A. Diaz*, S. J. Liu, C. Sandoval, A. Pollen, T. J. Nowakowski, D. A. Lim, A. Kriegstein. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics. 32(14), 2016. * corresponding author
  10. S. Liu, T. Nowakowski, A. Pollen, J. Lui, M. Horlbeck, F. Attenello, D. He, J. Weissman, A. Kriegstein, A. Diaz*, D. Lim*. Single cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology. 17(67), 2016. * corresponding author
  11. S. Müller, S. J. Liu, M. Malatesta, M. Aghi, A. Kriegstein, G. Kohanbash, D. A. Lim, A. DiazGENT-22. Single-cell profiling of glioblastoma biopsies identifies a family of activating PDGF-receptor deletions. Neuro-Oncology. 18(6), 2016. Adult Basic Research Award Soc Neuro-Onc 2016
  12. S. Müller, G. Kohanbash, S. J. Liu, D. Carrera, M. Aghi, D. Lim, H. Okada, A. Diaz. TMIC-29 Distinct molecular signatures of microglia and macrophages in the glioma perivascular niche. Neuro-Oncology. 18(6), 2016.
  13. J. Liu, E. Di Lullo, M. Malatesta, G. Kohanbash, B. Castro, H. Okada, A. Kriegstein, M. Aghi, D. Lim, A. Diaz. GENO-14.  Single-cell transcriptomics and genomics reveals a diversity of tumor and immune cell polarization signals in GBM.  Neuro-Oncology. 17(94), 2015.
  14. A. Pollen, T. Nowakowski, J. Chen, H. Retallack, C. Sandoval-Espinosa, C. Nicholas, J. Shuga, S. Liu, M. Oldham, A. Diaz, D. Lim, A. Leyrat, J. West, A. Kriegstein. Molecular Identity of Human Outer Radial Glia during Cortical Development. Cell, 163(1), 2015. PMCID: PMC4583716.
  15. A. Diaz, H. Qin, M. Ramalho-Santos, J. S. Song. HitSelect: A Comprehensive Tool for High-throughput Screening AnalysisNucleic Acids Research, 43(3), 2015. PMCID: PMC4330337.
  16. M. Suzawa, D. Miranda, K. Ramos, K. Ang, E. Faivre, C. Wilson, L. Caboni, M. Arkin, Y. Kim, R. Fletterick, A. Diaz, J. Schneekloth, H. Ingraham. A gene-expression screen identifies a non-toxic sumoylation inhibitor that Mimics SUMO-less human LRH-1 in liver. eLIFE, 2015.
  17. H. Qin*, A. Diaz*, L. Blouin, R. J. Lebbink, W. Patena, E. M. LeProust, M. T. McManus, J. S. Song, M. Ramalho-Santos, Systematic Identification of Barriers to Human iPS Cell Generation. Cell, 158(2), 2014. PMCID: PMC4130998. * co-first authors
  18. Nagarajan RP, Zhang B, Bell RJ, Johnson BE, Olshen AB, Sundaram V, Li D, Graham AE, Diaz A, Fouse SD, Smirnov I, Song J, Paris PL, Wang T, Costello JF. Recurrent epimutations activate gene body promoters in primary glioblastoma. Genome Research, 24:5, 2014. PMCID: PMC4009606.
  19. A. D. Ramos, A. Diaz, A. Nellore, R. N. Delgado, K. Y. Park, G. Gonzales-Roybal, M. C. Oldham, J. S. Song, D. A. Lim, Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny in Vivo. Cell Stem Cell, 12(5), 2013. PMCID: PMC3662805.
  20. A. Nellore, K. Bobkov, E. Howe, A. Diaz, J. S. Song, NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data. Front. Genet. Volume 11, January 2013. PMCID: PMC3542818.
  21. A. Diaz, A. Nellore, J. S. Song, CHANCE: comprehensive software for quality control and validation of ChIP-seq data. Genome Biology, 13(10), October 2012. PMCID: PMC4053734.
  22. A. Diaz, K. Park, D. Lim, J.S. Song, Normalization, bias correction, and peak calling for ChIP-seqStatistical Applications in Genetics and Molecular Biology. 11(3), March 2012. PMCID: PMC3342857.
  23. J. Hunkapiller, Y. Shen, A. Diaz, G. Cagney, D. McCleary, M. Ramalho-Santos, N. Krogan, B. Ren, J.S. Song, J.F. Reiter, Polycomb-Like 3 Promotes Polycomb Repressive Complex 2 Binding to CpG Islands and Embryonic Stem Cell Self-Renewal. PLoS Genetics. 8(3), March 2012. PMCID: PMC3305387.
  24. A. Diaz, An Error Analysis for Execution Traces of Hybrid Automata Using Jacobi's EquationNonlinear Analysis: Hybrid Systems. 2(1), March 2008, 74-80.
  25. P. -H. Maire, M. De Buhan, A. Diaz, C. Dobrzynski, G. Kluth, F. Lagoutiere, A Cell-Centered Arbitrary Lagrangian Eulerian (ALE) Method for Multimaterial Compressible FlowsEuropean Series in Applied and Industrial Mathematics: Proceedings Societe de Mathematiques Appliquees et Industrielles. Vol. 13 2008
  26. A. Diaz, Rezoning Techniques for ALE ComputationsProceedings of the 4th WSEAS/IASME Conference on Dynamical Systems and Control. October 2008
  27. A. Diaz, Extraction of Finite State Controllers, AD and DA maps, and Associated Small Topologies for Measure Valued Control LawsInternational Journal of Hybrid Systems, September 2003